Biology II
Daily Topics Covered in Class

Chapter 1, pages 1-5
biology, theme, biosphere, reductionism, photosynthesis, cell, Cell Theory, energy, atom, molecule, organelle, tissue, organ, organ system, population, community, environment, ecosystem, biotic, abiotic, evolution, holism, emergent properties, organism,

Chapter 1, pages 5-8
cell, division of labor, organelles, organs, systems, tissues, ecosystem, prokaryotic, eukaryotic, DNA, deoxyribonucleic acid, genes, biological modeling, cycling of nutrients, energy-flow from the sun, energy, cell membrane, cell wall, endoplasmic reticulum, mitochondria, ribosomes, Golgi bodies, lysosomes, vacuoles

Chapter 1, pages 8-14
DNA, deoxyribonucleic acid, double helix, protein, amino acids, genome, bioinformatics, enzymes, bio-feedback, positive bio-feedback, negative biofeedback, evolution, taxonomy, domain, kingdom, phylum, class, order, family, genus, species, variety, breed, Bacteria, Archaea, Eukarya, 

Chapter 1, pages 14-18
Charles Darwin, evolution, "descent with modification", natural selection, adaptations, science, supernatural, observations, naturalist, descriptive science, inductive reasoning, deductive reasoning, hypothesis,

Chapter 1, pages 19-24
controlled experiment, variable, manipulated variable, independent variable, responding variable, dependent variable, control variable, control group, experimental group, biotic, abiotic, biosphere, theory, technology, emergent properties, correlation, inductive reasoning, deductive reasoning, discovery science, descriptive science, naturalist, hypothesis, control group, experimental group, replication, engineers

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Chapter 33B    pages 684-685
arthropods, exoskeleton, endoskeleton, cuticle, chitin, protein, molting, hemolymph, chelicerae, mandibles, compound eye, simple eye, phylum, Trilobita, Chelicerata, Uniramia, Crustacea, chelicerates

Chapter 33B    pages 685-687
tracheal system, ducts, cuticle, pores, spiracles, cheliceriforms, chelicerae, arachnids, scorpions, spiders, ticks, mites, Horseshoe Crab, marine, spinnerets, silk, mandibles, millipedes, centipedes, diplopoda, chilopoda

Chapter 33B    pages 688-691
Hexapoda, insects, entomology, excretion, kidneys, Malpighian tubules, ganglion, cerebral ganglia, complete metamorphosis, incomplete metamorphosis, nymphs, larva, pupa, maggot, grub, metamorphosis, Blattodea, Coleoptera, Diptera, Hemiptera, Hymenoptera, Isoptera, Lepidoptera, Odonata, Orthoptera

Chapter 33B    page 692
crustaceans, isopods, copepods, decapods, appendage, regeneration, lice, calcium carbonate, cuticle, crayfish, sessile, motile, plankton, pillbug, shrimp, rollie-pollie, lobster, crabs

Chapter 33B    article "Insects That Sting"
allergies, hymenoptera, stinger, ovipositor, honey bee, anaphylactic shock, localized reaction, systemic reaction, hives, pallor, CDC, epinephrine, adrenaline, hypersensitivity, pyrethrin, chrysanthemum, insecticide, repellent, DEET

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Chapter 6, pages 94-96
cell, compound light microscope, refraction, magnification, resolving power, resolution, light, wavelength, Robert Hooke, Anton van Leeuwenhoek, organelles, electron microscope, SEM, TEM, depth of field,  metabolism

Chapter 6, pages 97-99
fractionation, centrifuge, prokaryotic, eukaryotic, cell membrane, plasma membrane, cytoplasm, cytosol, DNA, ribosomes, proteins, RNA, genes, bacteria, surface area to volume ratio, cytology, biochemistry, biological membranes

Chapter 6, pages 99-104
nucleus, eukaryotic cell, genetics, genes, mitochondria, chloroplast, chromatin, chromosomes, sex cells, gametes, sperm, egg, ribosomal RNA, messenger RNA, ribosomes, endoplasmic reticulum (smooth and rough), glycogen, Golgi apparatus, lysosomes, phagocytosis, hydrolytic enzymes, white blood cells, phospholipids, nuclear envelope, nucleus, nucleolus

Chapter 6, pages 105-111
vacuoles, food vacuole, contractile vacuole, central vacuole, respiration, photosynthesis, glucose, mitochondrion, chloroplast, cellular respiration, catabolic, anabolic, metabolic, amyloplast, chromoplast,  pseudopodia, white blood cells

Chapter 6, pages 112-122
plasma membrane, cell membrane, cell wall, cellulose, polysaccharide, pectin, wood, collagen, tight junctions, cytoskeleton, cilia, flagella, actin, myosin,

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Chapter 27    pp. 556-558
biomass, prokaryotes, eukaryotes, competition, normal flora, flatulence, Monera, Eubacteria, Animalia, Plantae, Fungi, Protista, extant, extinct, Arahaea, Domain, Kingdom, coccus, bacillus, spirillum, cell mambrane, cell wall, antibiotics, peptidoglycan, hypotonic, isotonic, hypertonic, cellulose, Gram stain, gram positive, gram negative

Chapter 27    pp. 558-562
flagellum, flagells, nucleoid region, conjugation, transduction, transformaton, Frederick Griffith, geometric growth, sigmoid growth curve, carrying capacity, pathogenic, gram-positive, gram-negative, capsule, pili, taxis, tropism, chromosome, genophore, binary fission, mutation, culture, growth, lipposaccharides, antibiotics, peptidoglycan, protein

Chapter 27  pp. 563-564
antibiotic resistance, capsule, autoclave, vegetative growth, antibiotics, phototroph, heterotroph, chemotroph, autotroph, photoautotroph, chemoautotroph, carbon, nonbiodegradable, endospores, photosynthesis, hydrogen sulfide, ammonia

Chapter 27    pp. 565, 1233, 1236
nitrogen, proteins, nucleic acids, nitrogen fixation, ammonia, nitrates, nitrites, fertilizer, legumes, Rhizobium, obligate aerobes, faculative aerobes, oxygen, obligate anaerobes, aerobic respiration, anaerobic respiration, , cyanobacteria, reducing environment, oxidizing environment, nitrification, Nitrobacter, Nitrosomonas, denitrification  

Chapter 27    pp. 565-569
biofilms, prokaryotic, domain, Archaea, Bacteria, extremophiles, methanogens, methane gas, greenhouse effect, halophile, thermophile, clade, Rhizobium, legumes, rikettsia, Nitrosommas, nitrogen-recycling, nitrates, nitrites, Eukarya, nongonococcal urethritis, chlamydias, cyanobacteria, actinomycetes, mycetes, "silent epidemic"

Chapter 27    pp. 570-571
toxins, Lyme Disease, Rocky Mountain Spotted Fever, dog tick, deer tick, sulfur bacteria, hydrogen sulfide, Escherichia coli, actinomycetes, cyanobacteria, recombinant DNA technology, clade, decomposers, symbiosis, commensalism, mutualism, parasitism, host, symbiont, parasite

Chapter 27    pp. 571-573
penicillin, cheese, prokaryote, pathogenic, parasite, normal flora, opportunistic infection, Koch's postulates, exotoxins, endotoxins, traveler's diarrhea, E. coli, bioremediation, germ theory, Robert Koch, stromatolites

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Chapter 19     pp. 381-383
Tobacco Mosaic virus, virus, filterable virus, Dimitri Ivanowsky, Martinus Beijerinck, genome, protein coat, capsid, viral envelope, phage, bacteriophage, obligate intracellular parasite, host range, tissue specific, sheath, baseplate, genetic material, viral coat

Chapter 19     pp. 384-386
genome, phage, lytic cycle, host, parasite, temperate, virulent, restriction enzyme, viral envelope, obligate intracellular parasite, host range, parasite, herpesvirus, provirus, nucleic acid, bacteriophage, lysis, replication, chromosome, provirus, virulent, temperate virus

Chapter 19     pp. 386-391
lysogenic cycle, lytic cycle, temperate phage, prophage, retrovirus, reverse transcriptase, HIV, AIDS, immunodeficiency, syndrome, antibodies, vaccine, smallpox, Edward Jenner, cowpox, antibiotics, herpes virus, provirus, immune system, flu, RNA, DNA, variants, proteins

Chapter 19     pp. 391-394
retrovirus, transcriptase, HIV, HTLV, AIDS, AIDS "cocktail", Ebola, SARS, West Nile, epidemic, pandemic, vaccine, antibiotics, antivirals, flu, viroids, prions, enzymes, antibodies, AZT, acyclovir, variants, strains, mad cow disease

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Chapter 31    pages 636-637
decomposers, nutrients, eukaryotic, absorption, extracellular digestion, extracellular enzymes, hydrolytic, exoenzymes, saprobic, hypha, hyphae, mycelium, mycelia, septa, chitin, polysaccharide, Armllia ostoyae, spore, mycology, haustoria

Chapter 31,     pages 638-644
Zygomycetes, -mycete, terrestrial, aquatic, mycorrhizae, mating types, mutualistic, symbiosis, Rhizopus sp., sporangium, spores, rhizoids, gametangia, zygospore, meiosis, sexual reproduction, asexual reproduction

Chapter 31,     pages 644-647
Ascomycota, lichen, Basidiomycota, fairy ring, yeast, ascus, asci, conidia, club fungi, lignin, smut, rust, basidiocarp, mushroom, bracket fungi, toadstool

Chapter 31,     pages 648-651
deuteromycetes, asexual reproduction, sexual reproduction, yeast, lichen, pioneer species, desiccation, indicator species, mycorrhizae, ethylene, Athlete's Foot, budding, Saccharomyces, cyanobacterium, hormones

Chapter 31,    pages 651-652 and 594-596
Dutch Elm Disease, Chestnut Blight, aflatoxins, carcinogenic, LSD, athlete's foot, ringworm, Penicillium, phylogeny, Aspergillus, ergo, tinea, mycosis, basidiocarp, Roquefort cheese, blue cheese, Alexander Fleming, penicillin, syphilis

Chapter 31    articles "Ethanol" and "Nonsenses"
liver, enzymes, ethanol, ethyl alcohol, acetaldehyde, acetic acid, carbohydrates, lipids, cirrhosis, stimulant, depressant, vasodilation, vasoconstriction, olfactory senses, gustatory senses

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Chapter 34         pages 698-707
vertebrates, Vertebrata, deuterostomes, extant, phylum(a), coelomate, notochord, pharyngeal slits, post-anal, Chordata, cephalization, axial skeleton, appendicular skeleton, endoskeleton, exoskeleton, tetrapods, amniote, agnathans, serpentine, ossified, lateral line, central nervous system, chondrichthyes, clade

Chapter 34         pages 707-713
Chondrichthyes, osteichthyes, calcium phosphate, cartilage, buoyancy, olfaction, lateral line system, oviparous, ovoviviparous, viviparous, cloaca, operculum, swim bladder, tetrapod, buccal pumping, amphibians, Urodela, Apoda, Anura, tadpole, external fertilization, internal fertilization, chytrid fungus, indicator species

Chapter 34         pages 713-717
Elephant Bird, Amniotes, seed, amniotic egg, calcium carbonate, extraembryonic membranes, keratin, chitin, metabolism, ectotherm, endotherm, amnion, chorion, yolk sac, yolk, allantois, Jacobson's organ, asteroid, comet, Cretaceous period, olfaction, pit-vipers, cold-blooded, warm-blooded, toxin

Chapter 34          pages 718-720
Alligator, honeycombed, gizzard, brooding, pectoral muscles, keeled sternum, keratin, Archaeopteryx, ratites, passeriformes, preening, lactate, placenta, uterus, gizzard

Chapter 34         pages 720-728
Homo sapiens, binocular vision, opposable thumb, brachiating, arboreal, diurnal, nocturnal, paleoanthropology, anthropoid,  Australopithecus,  opossum, rodentia, marsupialia, lagomorpha, primate, carnivora, artiodactyls, cataceans, perissodactyla, chiroptea,

Chapter 34        pages 728-734
bipedalism, paleoanthropology, anthropoid, hominid, hominin, Homo sapiens, Homo erectus, Homo ergaster, Homo habilis, Australopithecus sp., sexual dimorphism, mosaic evolution, dentition, Turkana Boy, Beijing Man, Java Man, Neanderthals, cannibalism

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Chapter 40,   pages 852-858
anatomy, physiology, tissue, epithelial tissue, connective tissue, muscle tissue, nervous tissue, simple epithelium, stratified epithelium, cuboidal, columnar, squamous, glandular epithelia, mucous membranes, collagenous fibers, elastic fibers, loose connective tissue, adipose tissue, tendons, ligaments, strain, sprain, osteoblasts, plasma, red blood cells, white blood cells, erythrocytes, leucocytes

Chapter 40,    pages 858-861   
neuron, axon, dendrite, interneuron, actin, myosin, skeletal muscle, cardiac muscle, smooth muscle, involuntary muscle, voluntary muscle, lumen, striated, mesenteries, thoracic cavity, abdominal cavity, surface-to-volume ration, fusiform body shape, interstitial fluid, homeostasis, receptor, effector, positive feedback system, negative feedback system

Chapter 40,     pages 862-864   
positive feedback, negative feedback, acclimatization, thermoregulation, endotherms, ectotherms, poikilothermic, homeothermic, radiation, evaporation, conduction, convection, integumentary system, adipose tissue, blubber, goose bumps, epidermis, dermis, subcutaneous layer, sweat gland, follicle, sebaceous gland

Chapter 40    pages 864-869
vasoconstriction, vasodilation, countercurrent exchange, heat, calorie, kilocalorie, Calorie, gills, thermogenesis, hypothalamus, bioenergetics, enzymatic hydrolysis, respiration, fermentation, metabolism, biosynthesis, ATP

Chapter 40    pages 869-872
basal metabolic rate, standard metabolic rate, BMR, SMR, inverse relationship, ectotherms, endotherms, daily metabolic rate, torpor, hibernation, estivation, aestivation, catabolism, anabolism

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Chapter 41    pages 875-878
nutrition, chemical energy, herbivores, omnivores, carnivores, opportunistic feeders, organic molecules, essential nutrients, protein, biosynthesis, nutrients, carbohydrates, fats (lipids), amino acids, vitamins, minerals, fat-soluble vitamins, kwashiorkor, protein deficiency, vitamin A, vitamin D, vitamin E, vitamin K, vitamin C

Chapter 41    pages 878-882
mineral, calcium, phosphorus, sodium, potassium, chlorine, iron, fluorine, iodine, hypertension, undernourishment, malnourishment, marasmus, pellagra, anorexia, bulimia, suspension-feeders, fluid-feeders, bulk-feeders, enzymatic hydrolysis, ingestion, digestion, absorption, elimination, egestion

Chapter 41    pages 882-884
intracellular digestion, extracellular digestion, lysosomes, gastrovascular cavity, alimentary canal, liver, gall bladder, pancreas, ducts, peristalsis, sphincters, oral cavity, salivary glands, leukoplakia

Chapter 41    pages 884-886
salivary amylase, enzyme, salivary glands, sputum, saliva, glycoproteins, mucin, bolus, pharynx, trachea, esophagus, epiglottis, glottis, larynx, diaphragm, chyme, hydrochloric acid, pepsin, pepsinogen, Heimlich Maneuver, Adam's Apple, gastric juice

Chapter 41    pages 886-888
stomach, ulcer, Helicobacter pylori, sphincter, cardiac sphincter, pyloric sphincter, rugae, heartburn, acid indigestion, acid reflux, small intestine, duodenum, jejunum, ileum, sodium bicarbonate, trypsin, chymotrypsin, protease, liver, bile, bile salts, lipids, gall bladder, mucus

Chapter 41    pages 888-890
small intestine, lumen, villi, brush border, microvilli, hepatic portal vessel, liver, enzymes, toxins, large intestines, caecum, appendix, colon, rectum, feces, defecation, hydrogen sulfide, methane, excretion, diarrhea, constipation, flatus, flatuate, fiber, laxative, oligosaccharides, proctologist, laxative, enema

Chapter 41    pages 890-896
dentition, herbivores, omnivores, carnivores, ruminants, caprophagy, glycogen, lipids, protein, adipose tissue, obesity, gastrin, ghrelin, leptin, RDA

Chapter 41    article, "Bacteria Inside My Gut"

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Chapter 42    pp. 898-901
interstitial fluid, circulatory system, blood pressure, open circulatory system, closed circulatory system, hemolymph, cardiovascular system, atria, ventricles, arteries, veins, arterioles, venules, capillaries, systemic, stroke volume, capillary beds, cardiac cycle, systole, diastole, cardiac output

Chapter 42     pp. 901-904
atrioventricular valves, semilunar valves, pulmonary artery, pulse, heart murmur, self-excitable muscle, pacemaker, sinoatrial node, atrioventricular node, EKG, ECG, EEG, epinephrine, adrenal gland, "fight or flight", hydrostatic pressure, varicose veins

Chapter 42    pp. 905-907
lymph, lymphatic system, venae cavae, lymph nodes, plasma, white blood cells, antibodies, β-lymphocytes, red blood cells, platelets, immunoglobulins, hemoglobin, leukocytes, erythrocytes, pluripotent stem cells, leukemia, fibrinogen, fibrin, hemophilia, thrombus

Chapter 42    pp. 907-912
cardiovascular disease, cardiac muscle, coronary arteries, stroke, embolus, thrombus, hypertension, atherosclerosis, arteriosclerosis, angina pectoris, LDL, HDL, ventilation, countercurrent exchange, tracheal system, thoracic

Chapter 42    pp. 912-915
platelets, clotting, hemophilia, multipotent, pluripotent, stem cells, bone marrow, atherosclerosis, arteriosclerosis, angina pectoris, heart attack, CPR, stroke, fibrin, fibrinogen, thrombus, embolus, bone marrow, cardiovascular disease, plaque, myocardial infarction

Chapter 42    pages 915-919
LDL, HDL, lipids, proteins, transfats, aspirin, inflammatory response, hypertension, atmospheric oxygen, ventilation, countercurrent exchange, thoracic, abdominal, larynx, respiratory medium, respiratory surface, tracheal system, spiracles, glottis, epiglottis, esophagus

Chapter 42    pages 919-921
windpipe, trachea, bronchus, bronchi, bronchioles, aveolus, alveoli, mucus escalator, surfactants, exhalation, inhalation, silicosis, asbestosis, asthma, ventilation, positive pressure breathing, negative pressure breathing, diaphragm, pleurisy, tidal volume, vital capacity, residual volume, emphysema, hyperventilation 

Chapter 42    pages 921-927
oxygen, carbon dioxide, diaphragm, hyperventilation, respiratory pigments, hemoglobin, hemocyanin, hemolymph, pigments, erythrocyte, arthropods, Bohr shift, metabolic rate, myoglobin, mammalian diving reflex, Weddell Seals, cartoid body

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Chapter 48     pages 1047-1049
neuron, dendrite, axon, Schwann Cell, myelin sheath, synapse, ganglia, sensory neuron, motor neuron, affecter, effecter, interneuron, spinal cord, central nervous system, peripheral nervous system, somatic, neurotransmitters, glia cells

Chapter 48    pages 1055-1061
myelin sheath, Schwann cells, internodes, cerebral palsy, Parkinson's Disease, neurotransmitter, node, acetylcholine, dopamine, serotonin, nicotine, endorphins, opiates, receptor sites, melatonin, botox, botulism, hallucinogenic

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Chapter 49    pp. 1064-1068
neurons, vertebrate, MRI, electromagnetic waves, taxis, cnidarians, nerve net, cephalization, interneurons, anterior, central nervous system, ganglia, peripheral nervous system, spinal cord, reflex, mallet, dorsal nerve cord, central canal, ventricles, cerebrospinal fluid, gray matter, white matter, dendrites, axons, myelin sheath, glia cells, microglia, ependymal cells, oligodendrocytes, astrocytes, radial glia,

Chapter 49    pp. 1068-1071
peripheral nervous system, afferent, efferent, cranial nerves, spinal nerves, olfaction, motor system, autonomic system, sympathetic division, parasympathetic division, enteric division, antagonistic, flight-or-flight response, rest-and-digest, forebrain, midbrain, hindbrain, brainstem, cerebellum, cerebrum, cerebral cortex, diencephalon, brainstem, medulla oblongata, pons, optic lobes, homeostatic functions, arousal, sleep, reticular formation, melatonin, serotonin, tryptophan

Chapter 49    pp. 1071-1073
electroencephalogram, cerebellum, hindbrain, pons, coordination, diencephalon, thalamus, hypothalamus, eotorpithalamus, homeostasis, pituitary, circadian rhythms, biological clock, suprachiasmatic nucleus, cerebrum, cerebral hemispheres, corpus callosum, basal nuclei, cerebral palsey

Chapter 49    pages 1073-1078
epilepsy, seizures, cognition, cerebral cortex, neocortex, pallium, frontal lobe, temporal lobe, occipital lobe, parietal lobe, primary sensory areas, association areas, somatosensory receptors, thalamus, Broca's area, Wernicke's area, lateralization, corpus callosum, split-brain effect, limbic system, hippocampus, amygdala, prefrontal cortex, Phineas Gage, frontal lobotomy

Chapter 49     pages 1078-1084
consciousness, philosophy, fMRI, PET scan, cerebral cortex, synaptic connections, memory, learning, neural plasticity, short-term memory, long-term memory, synapse, embryogenesis, hippocampus, associations (learning), motor skills, long-term potentiation, schizophrenia, depression, major depressive disorder, bipolar disorder, amphetamines, fluoxetine, lithium, cocaine, stimulants, nicotine, heroin, dopamine, Alzheimer's disease, dementia, Parkinson's disease

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Chapter 50    pages 1099-1101
vision, ocellus, ocelli, eyespots, eyecups, photoreceptors, compound eye, single-lens eye, insects, crustaceans, ommatidia, facet, ultraviolet light, electromagnetic specturm, pupil, iris, sclera, choroid, cornea, retina, lens, ciliary body, aqueous humor, vitreous humor, neurons, optic disk, blind spot, glaucoma 

Chapter 50    pages 1101-1104
vitreous humor, retina, rods, cones, photoreceptors, nocturnal, fovea, retinal, vitamin A, opsin, rhodopsin, bleaching, photopsins, color blindness, bipolar cells, ganglion cells, horizontal cells, amacrine cells

Chapter 50    pages 1104-1108